For 2 h. After washing, the complex was detected with HRP-conjugated anti-M13 antibody, as described above. Standard curves were made based on the absorbance at each concentration of HA331 or HA protein.Surface Plasmon Resonance (SPR) analysisThe antigen-binding activity of purified Fab AN 3199 web fragments was evaluated using SPR biosensors XPR36 (Bio-Rad) and Biacore 2000 (GE Healthcare) at 25uC. A/SR-3029 chemical information Vietnam/1194/2004 H5N1 HA (2.5 mg/ml) or SAv (5 mg/ml) in 10 mM sodium acetate, pH 4.5, was injected to immobilize HA (8600 RU) or SAv (1730 RU) on a CM5 sensorchip containing amine coupling reagents. To the SAv-immobilized surface, 1 mM bio-HA331 was injected, and the chips were washed with 1 M NaCl/50 mM NaOH for 1 min each to immobilize HA331 (160 RU). Fab fragments (final concentration 25?00 nM) were applied as analytes at 20 ml/min with HBS-EP (10 mM HEPES, pH 7.4, 150 mM NaCl, 3.4 mM EDTA, 0.05 Tween 20). The sensorgrams for ligand-immobilized and mock-immobilized flow cells were analyzed with BIAevaluation 
software 4.1 to derive kinetic constants.Supporting InformationFigure S1 SPR sensorgrams obtained for purified Fab fragments bound to H5N1 HA protein. The lines are the same as those in Figure 4. H5N1 HA: recombinant A/Vietnam/ 1194/2004 H5N1 HA. (PDF) Figure S2 Amino acid sequences of the four positive clones. Complementarity determining regions (CDRs) are shown in bold, and the non-identical positions are boxed. (PDF) Table S1 Comparison of the gene usage for variable regions of the Fab clones. (PDF)ImmunofluorescenceMadin-Darby canine kidney (MDCK) cells (American Type Culture Collection, VA) were maintained in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10 fetal calf serum (FCS) and penicillin-streptomycin. Cells were grown in an incubator at 37uC and 5 CO2. The H5N1 influenza virus strains A/Whooper Swan/Mongolia/3/05 (H5MNG) and A/ Duck/Hokkaido/Vac-3/07 (Vac3) were grown in 10-day-old embryonated chicken eggs and titrated by plaque assay in MDCK cells. MDCK cells were inoculated with 4 MOI of H5MNG or Vac3 for 30 minutes and washed with PBS several times. Fresh medium with 10 FCS (without trypsin) was added to each well, and cells were incubated at 37uC. At 6 h post infection, cells were fixed in 4 paraformaldehyde. Fixed cells were treated with each purified Fab for 1 h. Mouse anti-c-myc monoclonal 
antibody 9E10 (OEM Concepts, Toms River, NJ) was then bound to Fab fragmentsAcknowledgmentsWe thank Hiroshi Kida and 1662274 Yoshihiro Sakoda for kindly providing A/ Whooper Swan/Mongolia/3/05 viral strain.Author ContributionsConceived and designed the experiments: JHD FS EYP HU. Performed the experiments: JHD AS NN. Analyzed the data: JHD. Wrote the paper: JHD AS HU.
DNA-based vaccines provide protection against cancers in a variety of animal models [1,2,3,4]. Upon vaccination, host autoimmunity is activated, resulting in significant suppression of tumor growth and metastasis [5,6,7,8,9]. Although conventional cancer DNA vaccines are designed to target tumor cells, more novel vaccines are being developed to target the specific contents in the tumor microenvironment [1,6,10,11]. Legumain, an asparaginyl endopeptidase, is significantly overexpressed on tumor-associated macrophages [6,12]. Moreover, DNA vaccines targeting legumain and delivered by attenuated Salmonella typhimurium exhibited efficiency in improving both the survival time of tumor-bearing mice and reducing tumor growth [1,13]. Given the promising results from previo.For 2 h. After washing, the complex was detected with HRP-conjugated anti-M13 antibody, as described above. Standard curves were made based on the absorbance at each concentration of HA331 or HA protein.Surface Plasmon Resonance (SPR) analysisThe antigen-binding activity of purified Fab fragments was evaluated using SPR biosensors XPR36 (Bio-Rad) and Biacore 2000 (GE Healthcare) at 25uC. A/Vietnam/1194/2004 H5N1 HA (2.5 mg/ml) or SAv (5 mg/ml) in 10 mM sodium acetate, pH 4.5, was injected to immobilize HA (8600 RU) or SAv (1730 RU) on a CM5 sensorchip containing amine coupling reagents. To the SAv-immobilized surface, 1 mM bio-HA331 was injected, and the chips were washed with 1 M NaCl/50 mM NaOH for 1 min each to immobilize HA331 (160 RU). Fab fragments (final concentration 25?00 nM) were applied as analytes at 20 ml/min with HBS-EP (10 mM HEPES, pH 7.4, 150 mM NaCl, 3.4 mM EDTA, 0.05 Tween 20). The sensorgrams for ligand-immobilized and mock-immobilized flow cells were analyzed with BIAevaluation software 4.1 to derive kinetic constants.Supporting InformationFigure S1 SPR sensorgrams obtained for purified Fab fragments bound to H5N1 HA protein. The lines are the same as those in Figure 4. H5N1 HA: recombinant A/Vietnam/ 1194/2004 H5N1 HA. (PDF) Figure S2 Amino acid sequences of the four positive clones. Complementarity determining regions (CDRs) are shown in bold, and the non-identical positions are boxed. (PDF) Table S1 Comparison of the gene usage for variable regions of the Fab clones. (PDF)ImmunofluorescenceMadin-Darby canine kidney (MDCK) cells (American Type Culture Collection, VA) were maintained in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10 fetal calf serum (FCS) and penicillin-streptomycin. Cells were grown in an incubator at 37uC and 5 CO2. The H5N1 influenza virus strains A/Whooper Swan/Mongolia/3/05 (H5MNG) and A/ Duck/Hokkaido/Vac-3/07 (Vac3) were grown in 10-day-old embryonated chicken eggs and titrated by plaque assay in MDCK cells. MDCK cells were inoculated with 4 MOI of H5MNG or Vac3 for 30 minutes and washed with PBS several times. Fresh medium with 10 FCS (without trypsin) was added to each well, and cells were incubated at 37uC. At 6 h post infection, cells were fixed in 4 paraformaldehyde. Fixed cells were treated with each purified Fab for 1 h. Mouse anti-c-myc monoclonal antibody 9E10 (OEM Concepts, Toms River, NJ) was then bound to Fab fragmentsAcknowledgmentsWe thank Hiroshi Kida and 1662274 Yoshihiro Sakoda for kindly providing A/ Whooper Swan/Mongolia/3/05 viral strain.Author ContributionsConceived and designed the experiments: JHD FS EYP HU. Performed the experiments: JHD AS NN. Analyzed the data: JHD. Wrote the paper: JHD AS HU.
DNA-based vaccines provide protection against cancers in a variety of animal models [1,2,3,4]. Upon vaccination, host autoimmunity is activated, resulting in significant suppression of tumor growth and metastasis [5,6,7,8,9]. Although conventional cancer DNA vaccines are designed to target tumor cells, more novel vaccines are being developed to target the specific contents in the tumor microenvironment [1,6,10,11]. Legumain, an asparaginyl endopeptidase, is significantly overexpressed on tumor-associated macrophages [6,12]. Moreover, DNA vaccines targeting legumain and delivered by attenuated Salmonella typhimurium exhibited efficiency in improving both the survival time of tumor-bearing mice and reducing tumor growth [1,13]. Given the promising results from previo.
