T 67 dpi by a recovery phenotype associated having a high quantity of repressed transcripts, therefore creating an unfavourable cellular environment to support SACMV infection. Even though cassava Sigma 1 Receptor Antagonist Storage & Stability resistance genes CMD1 and CMD2 have been positioned on linkage maps of cassava, these genes haven’t yet been identified and mapped to any scaffolds of version four.1 of your cassava draft genome presently out there through phytozome, and consequently the potential role of those two genes in CMD resistance remains to become elucidated. In summary, the exceptional lack of R gene response within the tolerant TME3 landrace at 12 dpi, in comparison with the highly susceptible T200 whereAllie et al. BMC Genomics 2014, 15:1006 biomedcentral/1471-2164/15/Page 14 ofTable two Selected differentially expressed (log2-fold) genes in T200 and TME3 used for further discussion in this paperGene Cassava accession Arabidopsis AGI accession 12 dpi Log2 fold T200 – Class I resistance genes Disease resistance protein (TIR-NBS-LRR class) family members Illness resistance protein (TIR-NBS-LRR class) household Disease resistance protein (TIR-NBS-LRR class) Disease resistance protein (TIR-NBS-LRR class) loved ones Disease resistance protein (TIR-NBS-LRR class) loved ones Disease resistance protein (TIR-NBS-LRR class), putative Illness resistance protein (TIR-NBS-LRR class) family Illness resistance protein (TIR-NBS-LRR class) Disease resistance protein (TIR-NBS-LRR class), putative Disease resistance protein (TIR-NBS-LRR class) family Disease resistance protein (TIR-NBS-LRR class) family MT1 Agonist Storage & Stability cassava4.1_009831m.g cassava4.1_025981m.g cassava4.1_006736m.g cassava4.1_000944m.g cassava4.1_000534m.g cassava4.1_000331m.g cassava4.1_001210m.g cassava4.1_007699m.g cassava4.1_031642m.g cassava4.1_032672m.g cassava4.1_017691m.g AT5G18350.1 AT4G16960.1 AT1G69550.1 AT4G12010.1 AT5G36930.two AT5G17680.1 AT3G44480.1 AT1G69550.1 AT5G17680.1 AT4G12010.1 AT3G04220.1 -1.98336 -1.93152 -2.74964 -3.93415 -2.40348 -2.04993 -1.80402 -3.89602 -3.68973 -2.75917 -2.28131 -3.96304 4.62E-04 two.18E-06 1.58E-03 1.14E-02 1.48E-02 two.04E-05 eight.52E-06 eight.32E-04 3.04E-03 1.78E-06 -3.16827 -4.51391 -3.38156 -2.16756 -2.20612 -3.88410 -3.83451 -3.88542 -3.47964 -4.09620 1.44E-04 2.55E-07 three.74E-05 1.24E-02 four.30E-03 two.74E-05 5.23E-06 1.83E-05 2.50E-05 three.13E-06 p-value 32 dpi Log2 fold p-value 67 dpi Log2 fold p-valueTME3 – Class I Resistance Genes Illness resistance protein (TIR-NBS-LRR class), putative Disease resistance protein (TIR-NBS-LRR class) family members T200 – Histone-related genes Histone H4 Histone H2A eight Histone superfamily protein Histone superfamily protein Histone superfamily protein Histone H2A ten Histone superfamily protein Histone superfamily protein Histone H2A 7 Histone H2A 7 Histone H4 Histone superfamily protein Histone H4 Histone H4 TME3 – Histone-related genes Histone acetyltransferase with the MYST family members cassava4.1_029570m.g AT5G64610.1 -3.17558 0.03731 cassava4.1_029975m.g cassava4.1_018866m.g cassava4.1_019888m.g cassava4.1_018611m.g cassava4.1_028744m.g cassava4.1_026667m.g cassava4.1_030637m.g cassava4.1_024615m.g cassava4.1_018569m.g cassava4.1_018568m.g cassava4.1_019914m.g cassava4.1_018874m.g cassava4.1_019911m.g cassava4.1_019891m.g AT2G28740.1 AT2G38810.2 AT1G07820.1 AT1G08880.1 AT3G27360.1 AT1G51060.1 AT3G27360.1 AT3G27360.1 AT5G27670.1 AT5G27670.1 AT2G28740.1 AT3G27360.1 AT2G28740.1 AT2G28740.1 2.92352 2.28609 1.74066 ?0.03976 0.04821 0.04304 1.74066 3.68140 2.48875 2.03029 2.33165 1.92352 1.86E-02 five.09E-03 5.18E-03 9.65E-03 1.04E-02 4.
